from tkinter.colorchooser import askcolor from tkinter import filedialog from tkinter import messagebox import tkinter as tk import csv import numpy as np from configparser import ConfigParser import pandas as pd import config ####################################### object class Jfsphoto (object): def __init__(self): self.nm = 0 self.nmi = 0 self.nm2 = 0 self.nm2i = 0 self.nm_left = 0 self.nm_right = 0 self.nm_step = 0 self.tnm_left = tk.StringVar() self.tnm_right = tk.StringVar() self.tnm_step = tk.StringVar() self.nmData16 = np.zeros(3694, np.uint16) ########## nm scale checkButton default nm-scale is off self.nm_checked = tk.IntVar() self.nm_checked.set(0) ########## darkline self.darkData16 = np.zeros(3694, np.float32) self.darkline_checked = tk.IntVar() self.darkline_checked.set(0) ########## baseline of the lightsource transmission or absorption self.baseData16 = np.zeros(3694, np.float32) self.baseline_checked = tk.IntVar() self.baseline_checked.set(0) self.baseline_start=0 self.baseline_end=0 self.abs_trans= tk.IntVar() ########## set to transition self.abs_trans.set(1) ########## dataframe to load and save photometer data self.pandas_count = 0 self.df = pd.DataFrame() def do_calibrate(self): win = tk.Toplevel() win.geometry("450x200+100+100") self.lab1 = tk.Label(win, text='Please enter filenames and nm of the peaks').grid(row=0,column=0,columnspan=6) ########## first peak self.tnm = tk.StringVar() self.tnm.set(str(self.nm)) self.tnmi = tk.StringVar() self.tnmi.set(str(self.nmi)) self.lab2 = tk.Label(win,text='first Peak nm').grid(row=1,column=0) self.en1 = tk.Entry(win,textvariable=self.tnm, width= 10).grid(row=1,column=1) self.bt1 = tk.Button(win,text="select File",command=lambda: self.openfile(1)).grid(row=1,column=2) self.lnm = tk.Label(win,textvariable =self.tnm).grid(row=1,column=3) self.lnm = tk.Label(win,text =" nm by index ").grid(row=1,column=4) self.lmi = tk.Label(win,textvariable=self.tnmi).grid(row=1,column=5) ########## second peak self.tnm2 = tk.StringVar() self.tnm2.set(str(self.nm2)) self.tnm2i = tk.StringVar() self.tnm2i.set(str(self.nm2i)) self.lab3 = tk.Label(win,text='second Peak nm').grid(row=2,column=0) self.en2 = tk.Entry(win,textvariable=self.tnm2, width= 10).grid(row=2,column=1) self.bt2 = tk.Button(win,text="select File",command=lambda: self.openfile(2)).grid(row=2,column=2) self.lnm2 = tk.Label(win,textvariable =self.tnm2).grid(row=2,column=3) self.lnm2 = tk.Label(win,text =" nm by index ").grid(row=2,column=4) self.lm2i = tk.Label(win,textvariable=self.tnm2i).grid(row=2,column=5) ########### calibration self.tnm_left.set(str(self.nm_left)) self.tnm_right.set(str(self.nm_right)) self.tnm_step.set(str(self.nm_step)) self.lab4 = tk.Label(win,text="left border [nm]").grid(row=3,column=0) self.lab5 = tk.Label(win,textvariable=self.tnm_left).grid(row=3,column=1) self.lab6 = tk.Label(win,text="right border [nm]").grid(row=3,column=2) self.lab7 = tk.Label(win,textvariable=self.tnm_right).grid(row=3,column=3) self.lab8 = tk.Label(win,text="[nm]/point").grid(row=3,column=4) self.lab9 = tk.Label(win,textvariable=self.tnm_step).grid(row=3,column=5) self.bt3 = tk.Button(win,text="Calibrieren",command=self.calibrate,state=tk.DISABLED) self.bt3.grid(row=4,column=0) self.bt4 = tk.Button(win,text="Load Config",command=self.conf_read).grid(row=4,column=1) self.bt5 = tk.Button(win,text="Save Config",command=self.conf_write).grid(row=4,column=2) ########### dialog modal win.focus_set() win.grab_set() win.wait_window() def do_msg(self,txt): self.mroot = tk.Tk() self.mroot.minsize(100,50) self.mroot.title(" Info ") self.label = tk.Label(self.mroot, text=txt,bg="yellow",fg="blue") self.label.pack() self.button = tk.Button(self.mroot, text='OK', width=25, command=self.mroot.destroy) self.button.pack() self.mroot.mainloop() ############ Darkline def do_save_darkline(self,dark): x = np.min(dark) if (x < 3700): self.do_msg(" This is not a Darkline ") return 0 else : self.darkData16 = dark*1.0 return 1 def get_darkline_checked(self): return self.darkline_checked.get() ############ Baseline depends on the capacity of the light source block spektralrange if the intensity is to low def do_save_baseline(self,base): ### no margin at all doIt = True #### no left margin left = True x = np.max(base) if (x < 500): self.do_msg(" This is not a Baseine \n Is the Lightsouce switch on ? ") return 0 else: for i in range(0,3694): if (base[i] < 200) : if doIt: if left: self.baseline_start = i else: self.baseline_end = i doIt = False self.baseData16[i] = 0 else: ## 300 should be in the ini file job! if (base[i] > 300): left = False self.baseData16[i] = base[i]*1.0 #print(self.baseline_start," ",self.baseline_end) return 1 def get_baseline_checked(self): return self.baseline_checked.get() ############ Calibration and Load/Save Configuration Part 2 def checkit(self): self.nm = int(self.tnm.get()) self.nmi = int(self.tnmi.get()) self.nm2 = int(self.tnm2.get()) self.nm2i = int(self.tnm2i.get()) if ((self.nm > 0) & (self.nmi > 0) & (self.nm2 > 0) & (self.nm2i > 0)): self.bt3.config(state = tk.NORMAL) def calibrate(self): self.nm_step = round((self.nm2 - self.nm)/(self.nm2i-self.nmi),5) self.nm_left = round(self.nm-(self.nm_step*self.nmi),0) self.nm_right = round(self.nm2 + self.nm_step*(3694-self.nm2i),0) self.tnm_left.set(str(self.nm_left)) self.tnm_right.set(str(self.nm_right)) self.tnm_step.set(str(self.nm_step)) def nm_scale_ok(self): if ((self.nm_left > 0) & (self.nm_right > 0)): return 1 else: return 0 def get_nm_checked(self): if (self.nm_scale_ok()): return self.nm_checked.get() else: return 0 def set_nm_scale(self): if (self.nm_scale_ok): self.nmData16 = np.linspace(self.nm_left,self.nm_right,3694) def get_nm_scale(self): self.set_nm_scale() return self.nmData16 def save_pandas(self): filename = filedialog.asksaveasfilename(defaultextension=".csv", title="Save file as") try: self.df['baseline']=self.baseData16 self.df['darkline']=self.darkData16 self.df['nmscale']=self.nmData16 self.df['p1']=config.rxData16 self.df.to_csv(filename) except IOError: messagebox.showerror("By the great otter!","There's a problem saving the file.") def load_pandas(self): filename = filedialog.askopenfilename(defaultextension=".csv", title="Open file ") try: self.df = pd.read_csv(filename,index_col=0) config.rxData16=self.df['p1'].copy() self.do_save_baseline(self.df['baseline']) self.do_save_darkline(self.df['darkline']) self.baseline_checked.set(1) self.darkline_checked.set(1) self.nm_checked.set(1) except IOError: messagebox.showerror("By the great otter!","There's a problem saving the file.") def openfile(self,xx): rxData16 = np.zeros(3694, np.uint16) filename = filedialog.askopenfilename(defaultextension=".dat", title="Open file") line_count = 0 try: with open(filename) as csvfile: readCSV = csv.reader(csvfile, delimiter=' ') for row in readCSV: if (line_count == 3): self.SHsent = int(row[1]) self.ICGsent = int(row[6]) if (line_count > 3): rxData16[line_count-4] = int(row[1]) line_count += 1 if (xx==1): self.nmi = np.argmin(rxData16) self.tnmi.set(str(self.nmi)) if (xx==2): self.nm2i = np.argmin(rxData16) self.tnm2i.set(str(self.nm2i)) self.checkit() except IOError: messagebox.showerror("By the great otter!","There's a problem opening the file.") def reset_settings(self): self.baseline_checked.set(0) self.darkline_checked.set(0) self.nm_checked.set(0) def conf_write(self): config = ConfigParser() config.read('config.ini') lis = config.sections() if ('main' not in lis): config.add_section('main') config.set('main','nm_left',str(self.nm_left)) config.set('main','nm_right',str(self.nm_right)) config.set('main','nm_step',str(self.nm_step)) with open('config.ini','w') as f: config.write(f) def conf_read(self): config = ConfigParser() try: config.read('config.ini') self.nm_left = float(config.get('main','nm_left',fallback='0')) self.tnm_left.set(config.get('main','nm_left',fallback='0')) self.nm_right = float(config.get('main','nm_right',fallback='0')) self.tnm_right.set(config.get('main','nm_right',fallback='0')) self.nm_step = float(config.get('main','nm_step',fallback='0')) self.tnm_step.set(config.get('main','nm_step',fallback='0')) self.set_nm_scale() except IOError: print("By the great otter!","No config.ini file")